Datasets, R Packages, GitHub
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Youngflesh, C. ***, K. Kapsar***, A. Uscanga, P.J. Williams, J.W. Doser, L. Kounta***, and P.L. Zarnetske. 2024. Inter- and intra-annual temperature and precipitation variability (1950-2022) across the ranges of non-migratory birds and their association with generation length ver 4. Environmental Data Initiative. doi.org/10.6073/pasta/c3e67f25ff4fc67d7037631589804f52
Zarnetske, P.L., K.C. Dobson**, M. Hammond#, and M.L. Young**. 2023. warmXtrophic: plant community responses to direct and herbivore-mediated indirect effects of climate warming across multiple years at Kellogg Biological Station Long-Term Ecological Research Sites (KBS LTER), Michigan, USA, and University of Michigan Biological Station (UMBS), Michigan, USA. ver 2. Environmental Data Initiative.
doi.org/10.6073/pasta/ec1c1534994883f44e529610e9638305.
Gerstner, B.E**., P.L. Zarnetske, and P. Bills. 2023. Frugivoria: A trait database for birds and mammals exhibiting frugivory across contiguous Neotropical moist forests ver 5. Environmental Data Initiative.
https://doi.org/10.6073/pasta/168e95f04d4726d31d868bfe22d749a5.
Twardochleb, L.A.**, E. Hiltner*, M. Pyne, P. Bills, and P.L. Zarnetske. 2020. Freshwater insect occurrences and traits for the contiguous United States, 2001 - 2018 ver 5. Environmental Data Initiative. https://doi.org/10.6073/pasta/8238ea9bc15840844b3a023b6b6ed158
Zarnetske, P.L., K.C. Dobson**, M. Hammond#, and M.L. Young**. 2023. warmXtrophic: plant community responses to direct and herbivore-mediated indirect effects of climate warming across multiple years at Kellogg Biological Station Long-Term Ecological Research Sites (KBS LTER), Michigan, USA, and University of Michigan Biological Station (UMBS), Michigan, USA. ver 2. Environmental Data Initiative.
doi.org/10.6073/pasta/ec1c1534994883f44e529610e9638305.
Gerstner, B.E**., P.L. Zarnetske, and P. Bills. 2023. Frugivoria: A trait database for birds and mammals exhibiting frugivory across contiguous Neotropical moist forests ver 5. Environmental Data Initiative.
https://doi.org/10.6073/pasta/168e95f04d4726d31d868bfe22d749a5.
Twardochleb, L.A.**, E. Hiltner*, M. Pyne, P. Bills, and P.L. Zarnetske. 2020. Freshwater insect occurrences and traits for the contiguous United States, 2001 - 2018 ver 5. Environmental Data Initiative. https://doi.org/10.6073/pasta/8238ea9bc15840844b3a023b6b6ed158
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4. Smith, A.C.*** , P.L. Zarnetske, K. Dahlin, A. Wilson, A. Latimer. 2022. CRAN. geodiv: Methods for Calculating Gradient Surface Metrics. R package version 1.0.5. https://CRAN.R-project.org/package=geodiv
3. Read, Q.D.***, A. Yue, I.E. Fluck, B. Baiser, J.M. Grady***, P.L. Zarnetske, and S. Record. 2022. Ostats: O-statistics, or pairwise community-level niche overlap statistics. R package version 0.2.0. https://CRAN.R-project.org/package=Ostats
2. Li, D., S. Record, E. Sokol, M. E. Bitters, M. Y. Chen, A. Y. Chung, M. R. Helmus, R. Jaimes, L. Jansen, M. A. Jarzyna, M. G. Just, J. M. LaMontagne, B. Melbourne, W. Moss, K. Norman, S. Parker, N. Robinson, B. Seyednasrollah, C. Smith, S. Spaulding, T. Surasinghe, S. Thomsen, and P.L. Zarnetske. neonDivData v0.1.0. Standardized NEON Organismal Data for Biodiversity Research. (2022). daijiang.github.io/neonDivData/.
1. Smith, A.C.***, A. Ballantyne, P.L. Zarnetske. 2019. disturbr: Disturbance detection and attribution in R. R package version 0.1.0. https://github.com/AnnieCooper/disturbr-public
3. Read, Q.D.***, A. Yue, I.E. Fluck, B. Baiser, J.M. Grady***, P.L. Zarnetske, and S. Record. 2022. Ostats: O-statistics, or pairwise community-level niche overlap statistics. R package version 0.2.0. https://CRAN.R-project.org/package=Ostats
2. Li, D., S. Record, E. Sokol, M. E. Bitters, M. Y. Chen, A. Y. Chung, M. R. Helmus, R. Jaimes, L. Jansen, M. A. Jarzyna, M. G. Just, J. M. LaMontagne, B. Melbourne, W. Moss, K. Norman, S. Parker, N. Robinson, B. Seyednasrollah, C. Smith, S. Spaulding, T. Surasinghe, S. Thomsen, and P.L. Zarnetske. neonDivData v0.1.0. Standardized NEON Organismal Data for Biodiversity Research. (2022). daijiang.github.io/neonDivData/.
1. Smith, A.C.***, A. Ballantyne, P.L. Zarnetske. 2019. disturbr: Disturbance detection and attribution in R. R package version 0.1.0. https://github.com/AnnieCooper/disturbr-public
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aquaXterra: investigating aquatic-terrestrial linkages across scales https://github.com/aquaXterra
aquaXterra aims to understand how scale affects interactions between biodiversity and ecosystem function among terrestrial and aquatic realms. Funding: Michigan State University, NASA
- Repositories include:
bioXgeo: Biodiversity X Geodiversity https://github.com/bioXgeo
Connecting Biodiversity and Geodiversity Across Scales with Remote Sensing. Funding: NASA
- Repositories include:
IBEEM-MSU: IBEEM: The Institute for Biodiversity, Ecology, Evolution, and Macrosystems at Michigan State University https://github.com/IBEEM-MSU
IBEEM is interdisciplinary, and leverages Macrosystems Science, Ecology, and Evolution to understand & predict changes to Biodiversity. Funding: MSU Strategic Partnership Grant
- Repositories include:
kbs-lter: Kellogg Biological Station Long Term Ecological Research (KBS LTER) https://github.com/kbs-lter
KBS-LTER repositories include the Rainfall Exclusion eXperiment (REX) analysis
- Repositories include:
NEON-biodiversity: National Ecological Observatory Network (NEON) Biodiversity Research https://github.com/NEON-biodiversity
Research on biodiversity and community ecology and their biotic and abiotic drivers, across the National Ecological Observatory Network (funding: NSF)
- Repositories include:
SpaCE-Lab-MSU: SpaCE Lab: Spatial and Community Ecology Lab @ Michigan State University github.com/SpaCE-Lab-MSU
The lab aims to understand and predict how biodiversity responds to climate change and land use changes across scales.
- Repositories include:
- warmXtrophic
- avian-meta-network
- Avian-Interaction-Database
- OTCMetaAnalysis
- r_guide
- MSUGradSpatialEcology - Graduate Spatial Ecology (IBIO870) Labs; website = https://space-lab-msu.github.io/MSUGradSpatialEcology/
srm-ecology: Ecological impacts of solar radiation modification https://github.com/srm-ecology
Aim: to understand and predict potential ecological impacts of solar radiation geoengineering. Funding: US National Science Foundation
- Repositories include:
xprize-msu: XPRIZE Rainforest: Amazonas/MSU Team https://github.com/xprize-msu
code shared among members of the XPRIZE Rainforest team: ACT NOW Amazonas Action Alliance. Funding: Michigan State University